Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015905412.1_cds_XP_016455652.1_49566
CDS Infomation

[gene=LOC107779691] [db_xref=GeneID:107779691] [protein=protein strawberry notch-like isoform X4] [protein_id=XP_016455652.1] [location=join(599..748,859..1002,1333..1432,1523..1648,2574..2647,2742..2914,3029..3122,11411..11508,11584..11719,11970..12076,12294..12389,12484..12571,12678..12798,13810..13921,13996..14119,14187..14264,14346..14464,17432..17459)] [gbkey=CDS]
Sequence

ATGTTTATGTTATGTTCTCAGGACATGTATAAAAAGGCAGCTGAGTTCTGGGCCGAGCTT
AGAGTGGAATTGCTGTCAGCTGGTGCATTTCTCAGTGATGATAAGCCCTCTTCTAATCAG
CTCTGGAGACTTTACTGGGCTAATCATCAGCGCTTCTTTAGACACATGTGTATGTCCGCT
AAGGTATCTGCAGTAGTTAGAATCGCAAAGGAAGCATTGGCAGAAAGTAAATGTATAGTC
GTAGGCCTTCAGAGCACTGGAGAAGCAAGAACAGAGGAAGCTGTTTCAAAATATGGTCTT
GAACTTGATGATTTTGTTTCTGGACCTCGTGAGTTGTTACTTAAATTTGTAGAAGAGAAT
TATCCGTTGCCTGAAAAACCTGAACCACTTCCTGAGGAAAGTGTCAAAGAGCTTCAACGA
AAGAGACACTCTGCAGCACCTGGTGTATCATTTAGAGGGAGAGTGAGAAAAGCTGCTAAA
TGGCAAACGAATGATCAAAGGAGTGATGAAGAATCAGATACTGATTCCGAATATGAATCT
ACCGAGTCCGATGACGATGAATTTCAGATCTGTGATATTTGTAATTCGGAGGAGGAGAGG
AAAAAATTGCTCCAGTGTTCCTGTTGTAGCCAACTTGTACATCCGACATGTTTAATTCCA
CCTGTTACAGAGTCAGTTTCTGCGGATTGGTGTTGCCATTCTTGCAAGGAAAAGACAGAT
GAATATATCCAAGCAAGACATGCCTATGTTGCTGAACTTTTGAAAAGGTATGAAGGGGCT
GTTGAAAGAAGGTCCAAAATTTTGGATATAATTCGTTCTTTGGATCTTCCAAATAATCCG
TTGGATGATATTATTGATCAGCTTGGGGGCCCAGAGAAAGTGGCAGAAATAACAGGGAGA
AAGGGCATGCTCGTGAGGGCGTCTGGTGGAAAAGGTGTCACCTATCAGGCACGAAACACG
AAGGATGTATCCATGGAAATGGTTAATATACATGAGAAGCAGCTTTTCATGGATGGGAAG
AAGCTGGTAGCTATAATTTCTGAAGCTGGGTCAGCTGGAGTTTCTTTGCAAGCTGATAGA
AGGGCTTTAAACCAGAGAAGAAGGGTCCATTTGACTTTGGAATTACCTTGGAGTGCTGAT
CGGGCAATTCAGCAGTTTGGAAGAACTCATCGCTCAAATCAAGCTTCTGCACCTGAGTAT
AAGCTACTTTTTACTAATCTTGGTGGAGAACGGCGGTTTGCATCTGTGGTTGCTAAGAGA
CTTGAATCACTTGGGGCACTGACTCAGGGAGATCGTCGAGCTGGACTATCTCTTAGTGCT
TATAACTATGATAGTTCCTTTGGGAAGAGGGCCCTGATGATGTTGTATAGAGGGATCATG
GAGCAGGATCCTTTGCCACTTGTACCACCAGGTTGTTCTGCTGATAAACCAGATGCTTTA
CAGGATTTCATTTTGAAGGGGAAAGCTGCGCTTGTTTCTGTTGGAATAATAAGAGACTCC
GTTCTTGGTAATGGAAAGGACTCTGGAAAGCTTTCTGGCCGTATAGTTGATTCGGACATG
CATGATGTTGGGCGTTTCCTTAACAGGCTCTTGGGATTGCCACCTGAAATCCAAAATAGG
CTTTTTGAGTTATTTGTCAGCATTCTTGATCTTTTAGTTCAGAATGCACGCCTTGAAGGA
CATTTAGACTCTGGAATTGTTGATATGAAAGCTACCACTGTTGAACTACAAGGGACGCCA
AAGACTGTTCATATTGACAACTTGTCCGGGGCTTCAACCATATTGTTTACTTTTACATTG
GATCGTGGACTCATTTGGGAGTCAGCGTATGCGTTGCTTGAAGAGAAGCAAAAGGATGAG
TCTAGTTCAACTAATAGTGGATTCTATGAATCCAAACGAGAATGGTTGGGAAGATGGCAT
TTTCTATTAGCATTTGAAGGTGTATGCATGGCCCAAAATGTAAGCTAG

Peptide Sequence

PEP ID

XP_016455652.1
PEP Infomation

PREDICTED: protein strawberry notch-like isoform X4 [Nicotiana tabacum]
Sequence

MFMLCSQDMYKKAAEFWAELRVELLSAGAFLSDDKPSSNQLWRLYWANHQRFFRHMCMSA
KVSAVVRIAKEALAESKCIVVGLQSTGEARTEEAVSKYGLELDDFVSGPRELLLKFVEEN
YPLPEKPEPLPEESVKELQRKRHSAAPGVSFRGRVRKAAKWQTNDQRSDEESDTDSEYES
TESDDDEFQICDICNSEEERKKLLQCSCCSQLVHPTCLIPPVTESVSADWCCHSCKEKTD
EYIQARHAYVAELLKRYEGAVERRSKILDIIRSLDLPNNPLDDIIDQLGGPEKVAEITGR
KGMLVRASGGKGVTYQARNTKDVSMEMVNIHEKQLFMDGKKLVAIISEAGSAGVSLQADR
RALNQRRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYKLLFTNLGGERRFASVVAKR
LESLGALTQGDRRAGLSLSAYNYDSSFGKRALMMLYRGIMEQDPLPLVPPGCSADKPDAL
QDFILKGKAALVSVGIIRDSVLGNGKDSGKLSGRIVDSDMHDVGRFLNRLLGLPPEIQNR
LFELFVSILDLLVQNARLEGHLDSGIVDMKATTVELQGTPKTVHIDNLSGASTILFTFTL
DRGLIWESAYALLEEKQKDESSSTNSGFYESKREWLGRWHFLLAFEGVCMAQNVS

Transcript Sequence

Gene sequence data has not been registered.